Research Information System
Other, pp.1-10, 2014
MLSeq package provides several algorithms including support vector machines (SVM), bag- ging support vector machines (bagSVM), random forest (RF) and classification and regression trees (CART) to classify sequencing data. To achieve this, MLSeq package requires a count table, which contains the number of reads mapped to each transcript for each sample. This kind of count data can be obtained from RNA-Seq experiments, also from other sequencing experiments such as DNA or ChIP-sequencing. This vignette is presented to guide researchers how to use this package.