Identifying Genetic Factors Contributing to Non-Syndromic Early-Onset Childhood Obesity Utilizing Whole-Exome Sequencing in Consanguineous Families


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Olgun H. B., Poyrazoğlu Ş., Tuncer Kılınç F. N.

Genes, cilt.17, ss.1-16, 2026 (Hakemli Dergi)

Özet

Purpose: Obesity, characterized by abnormal fat accumulation with comorbidities, continues

to increase dramatically, particularly in the pediatric population. Identifying the

environmental and genetic causes underlying the development of obesity during early

childhood is crucial for establishing preventive and protective treatments for this complex

disease. We aimed to investigate genetic variants related to non-syndromic early-onset

childhood obesity. Methods: Whole-exome sequencing was performed in three independent

consanguineous families with obesity, including three index cases and two additional

affected siblings. Non-synonymous variants with minor allele frequency < 0.01 in all normal

populations were filtered using the Genomize-SEQ Platform. Variant confirmations

and familial segregations were analyzed by Sanger sequencing. Results: WES revealed a

shared ATXN3 gene variant and two known variants of the SH2B1 and ADIPOQ genes,

which were reported to be associated with obesity. Additionally, five heterozygous novel

gene variants of the ANKK1, NEGR1, OGDH, ABCB1, and GSK3B genes were identified,

which are predicted to cause excessive fat accumulation and disruption of energy balance

in individuals. Conclusions: We suggest that the cumulative effects of all obesity-associated

detected variants lead to the early-onset obesity phenotype observed in individuals.

Hence, periodic follow-up and treatment opportunities are recommended for index cases,

alongside the adoption of a more active lifestyle and healthy nutrition practices.