Qualitative assessment of DNA isolation from fresh, frozen, and ancient human bone using a homogenizer-assisted workflow.


Karaman V., Tepgeç F., Sabancı P. A., Aslanger A. D., Görgülü M., Dölen Burak D., ...Daha Fazla

Forensic Science International, sa.380, ss.1-7, 2025 (Hakemli Dergi) identifier

Özet

Effective DNA recovery from bone material is essential for applications in biomedical research, clinical diagnostics,

and forensic and archaeogenetic investigations. In this study, DNA isolation performance was evaluated

in an exploratory manner in human bone samples representing three preservation states: fresh,

cryopreserved, and ancient. All samples were processed using a unified bead mill homogenization and magnetic

bead–based extraction workflow in order to maintain procedural consistency. DNA quantity and purity were

evaluated by spectrophotometry, and amplifiability was assessed using nuclear and mitochondrial PCR assays as

well as representative STR profiling. Fresh and cryopreserved samples yielded higher DNA concentrations and

more consistent amplification than ancient specimens, in which recovery was primarily constrained by postmortem

degradation. PCR success demonstrated a clear dependence on amplicon length, with shorter mitochondrial

and nuclear targets amplifying more reliably across all sample types. Due to the limited sample size

and the use of a single individual per preservation group, the results are presented as qualitative observations

rather than as statistically generalizable conclusions. Within these constraints, the study demonstrates the

feasibility of using a standardized mechanical disruption and extraction workflow across bone samples of

differing preservation status and provides a methodological reference for future larger-scale studies involving

both modern and degraded skeletal material.