Publications & Works

Publication Network

Published journal articles indexed by SCI, SSCI, and AHCI

Investigation of Hydantoin-Based Drugs Used in theTreatment of Epilepsy Using Quantum ChemicalCalculations, Molecular Docking, Molecular Dynamics,ADMET, In Vitro, and Spectroscopic Methods

Kandemir M. C., Bıçak B., Kecel Gündüz S., Akman G.
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY , vol.124, pp.1-22, 2024 (SCI-Expanded)

In silico and in vitro studies of Tyr-Lys-Thr tripeptide against human lung cancer cell line (A549)

Bıçak B., Akman G.
Bratislava Medical Journal , vol.125, no.10, pp.1-8, 2024 (SCI-Expanded)

Phytochemical profiling, in vitro biological activities, and in silico (molecular docking and absorption, distribution, metabolism, excretion, toxicity) studies of <i>Polygonum cognatum</i> Meissn

Akpinar R., YILDIRIM BAŞTEMUR G., BIÇAK B., ŞANLI N. Ö., MERTOĞLU KAMALI E., PEKMEZ M., et al.
JOURNAL OF SEPARATION SCIENCE , vol.47, 2024 (SCI-Expanded) identifier identifier identifier

New Coumarin Derivative with Potential Antioxidant Activity: Synthesis, DNA Binding and In Silico Studies (Docking, MD, ADMET)

Kecel Gündüz S., Kılınç Y., Bıçak B., Gok B., Belmen B., Aydoğan F., et al.
ARABIAN JOURNAL OF CHEMISTRY , vol.16, pp.1, 2023 (SCI-Expanded)

Structural, spectroscopic, molecular docking, ADME, molecular dynamics studies of Val-Trp dipeptide

Bıçak B.
JOURNAL OF BIOMOLECULAR STRUCTURE AND DYNAMICS , vol.41, pp.1-18, 2023 (SCI-Expanded)

Microplastic Accumulation in Crayfish Astacus leptodactylus (Eschscholtz 1823) and Sediments of Durusu (Terkos) Lake (Turkey)

MÜLAYİM A., Bat L., Oztekin A., KECEL GÜNDÜZ S., Yucedag E., BIÇAK B.
WATER AIR AND SOIL POLLUTION , vol.233, no.11, 2022 (SCI-Expanded) Sustainable Development identifier identifier

Molecular docking studies of YKT tripeptide and drug delivery system with poly(epsilon-caprolactone) nanoparticles

Bicak B., Kecel-Gunduz S., Budama-Kilinc Y., Ozdemir B.
ARCHIV DER PHARMAZIE , vol.355, 2022 (SCI-Expanded) identifier identifier identifier

STRUCTURAL, SPECTROSCOPIC, IN SILICO, IN VITRO AND DNA BINDING EVALUATIONS OF TYROSYL-LYSYL-THREONINE

Bıçak B., Kecel Gündüz S., Kılınç Y., Imhof P., Gök B., Akman G., et al.
Journal Of Biomolecular Structure & Dynamics , vol.1, no.1, pp.1, 2021 (SCI-Expanded)

Structural Characterization and Drug Delivery System of Natural Growth-Modulating Peptide against Glioblastoma Cancer

Kılınç Y., Kecel Gündüz S., Çakır Koç R., Aslan B., Bıçak B., Kökcü Y., et al.
International Journal Of Peptide Research And Therapeutics , vol.1, no.1, pp.1-45, 2021 (SCI-Expanded) Sustainable Development

Computer-Aided Anticancer Drug Design: In vitro and In silico Studies of New Iminocoumarin Derivative

Kecel Gündüz S., Kılınç Y., Gok B., Bıçak B., Akman G., Arvas B., et al.
JOURNAL OF MOLECULAR STRUCTURE , no.1, pp.1, 2021 (SCI-Expanded)

PEPTIDE BASED NANO-DRUG CANDIDATE FOR CANCER TREATMENT: PREPARATION, CHARACTERIZATION, IN VITRO AND IN SILICO EVALUATION

Bıçak B., Kılınç Y., Kecel Gündüz S., Zorlu T., Akman G.
JOURNAL OF MOLECULAR STRUCTURE , vol.1240, pp.130573, 2021 (SCI-Expanded) Sustainable Development

New nanodrug design for cancer therapy: Its synthesis, formulation, in vitro and in silico evaluations

KILINÇ Y., Kecel-Gunduz S., Ozdemir B., BIÇAK B., AKMAN G., ARVAS B., et al.
ARCHIV DER PHARMAZIE , vol.353, no.11, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

In Silico design of AVP (4–5) peptide and synthesis, characterization and in vitro activity of chitosan nanoparticles

Kecel-Gunduz S., Budama-Kilinc Y., Çakır Koç R., Zorlu T., Bicak B., Kokcu Y., et al.
DARU, Journal of Pharmaceutical Sciences , vol.28, pp.139-157, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

Structural analysis, molecular dynamics and docking calculations of skin protective tripeptide and design, characterization, cytotoxicity studies of its PLGA nanoparticles

Kokcu Y., Kecel-Gunduz S., Budama-Kilinc Y., Cakir-Koc R., Bicak B., Zorlu T., et al.
Journal of Molecular Structure , vol.1200, 2020 (SCI-Expanded) Sustainable Development identifier identifier

In silico Analysis of Sulpiride, Synthesis, Characterization and In vitro Studies of its Nanoparticle for the Treatment of Schizophrenia

Kecel-Gunduz S., Budama-Kilinc Y., Cakir-Koc R., Zorlu T., Bıçak B., Kokcu Y., et al.
CURRENT COMPUTER-AIDED DRUG DESIGN , vol.16, no.2, pp.104-121, 2020 (SCI-Expanded) identifier identifier identifier

Papain Loaded Poly(epsilon-Caprolactone) Nanoparticles: In-silico and In-Vitro Studies

Budama-Kilinc Y., Cakir-Koc R., Kecel-Gunduz S., Zorlu T., Kokcu Y., Bicak B., et al.
JOURNAL OF FLUORESCENCE , vol.28, pp.1127-1142, 2018 (SCI-Expanded) identifier identifier identifier

Computational design of Phe-Tyr dipeptide and preparation, characterization, cytotoxicity studies of Phe-Tyr dipeptide loaded PLGA nanoparticles for the treatment of hypertension

Kecel-Gunduz S., Budama-Kilinc Y., Koc R. C., Kokcu Y., Bicak B., Aslan B., et al.
Journal of Biomolecular Structure and Dynamics , vol.36, pp.2893-2907, 2018 (SCI-Expanded) Sustainable Development identifier identifier identifier

Novel NAC-loaded poly(lactide-coglycolide acid) nanoparticles for cataract treatment: Preparation, characterization, evaluation of structure, cytotoxicity, and molecular docking studies

Budama-Kılınc Y., Cakır-Koc R., Kecel-Gunduz S., Kokcu Y., Bicak B., Mutlu H., et al.
PeerJ , vol.2018, 2018 (SCI-Expanded) identifier identifier identifier

Structural and spectroscopic investigation on antioxidant dipeptide, L-Methionyl-L-Serine: A combined experimental and DFT study

Kecel-Gunduz S., Bicak B., Celik S., Akyuz S., Ozel A.
Journal of Molecular Structure , vol.1137, pp.756-770, 2017 (SCI-Expanded) identifier identifier

Articles Published in Other Journals

Geometry Optimization, Molecular Docking and ADMET Studies of Echimidine Molecule

Bıçak B.
CUMHURIYET SCIENCE JOURNAL , vol.45, no.3, pp.591-597, 2024 (Peer-Reviewed Journal)

A Study of The Anticancer Effect of 1,8 Cineole: Molecular Docking Analysis

Bıçak B.
Bilge International Journal of Science and Technology Research , vol.8, no.1, pp.50-55, 2024 (Peer-Reviewed Journal)

A Theoretical Study: DNA Binding and ADMET Profile of Some Hydroxycinnamic Acids

Bıçak B., Kecel Gündüz S.
Physics and Astronomy Reports , vol.1, no.2, pp.74-84, 2023 (Peer-Reviewed Journal)

INTERACTION OF GHK TRIPEPTIDE WITH RECEPTORS TARGETED IN SOME CANCER STUDIES: A THEORETICAL APPROACH WITH MOLECULAR DOCKING

Bıçak B., Kecel Gündüz S.
Hittite Journal of Science and Engineering , vol.10, no.3, pp.1, 2023 (Peer-Reviewed Journal) Sustainable Development

INVESTIGATION OF THE EFFICACY OF H-PHE-TYR-OH DIPEPTIDE IN THE TREATMENT OF HYPERTENSION USING IN SILICO METHODS

Bıçak B., Kecel Gündüz S.
CUMHURIYET SCIENCE JOURNAL , no.4, pp.1-12, 2022 (Peer-Reviewed Journal)

Conformational Analysis of Tyrosyl-Lysyl-Threonine Tripeptide Using MM, MD and QM Methods and Its Hyperpolarizability Study

Bıçak B., Kecel Gündüz S.
SAKARYA UNIVERSITY JOURNAL OF SCIENCE , vol.26, no.4, pp.745-756, 2022 (Peer-Reviewed Journal)

IN SILICO ANALYSIS FOR CHARACTERIZING THE STRUCTURE AND BINDING PROPERTIES OF ALA-HIS-LYS (AHK) TRIPEPTIDE

Kecel Gündüz S., Koç E., Bıçak B., Kökcü Y., Özel A., Akyüz S.
The Online Journal of Science and Technology , vol.10, no.3, pp.111-120, 2020 (Peer-Reviewed Journal)

The Interaction of Ile-Phe Dipeptide with Phosphatidylinositide 3-Kinase (PI3K): Molecular Dynamics and Molecular Docking Studies

Bıçak B., Kokcu Y., Kecel Gündüz S., Özel A., Akyüz S.
Natural and Engineering Sciences (NESciences) , no.1, pp.1, 2020 (Peer-Reviewed Journal)

Molecular Docking and Molecular Dynamics Studies of L-Glycyl-L-Glutamic Acid Dipeptide

Bıçak B., Kecel Gündüz S., Kokcu Y., Özel A., Akyüz S.
Bilge International Journal of Science and Technology Research , vol.3, no.1, pp.1-9, 2019 (Peer-Reviewed Journal)

COMPUTERISED DESIGNING OF DOXORUBICIN WITH BREAST CANCER CELLS

Sener L., Gunduz S., Şener A., Bicak B., Kokcu Y., Ozel A., et al.
JOURNAL OF ISTANBUL FACULTY OF MEDICINE-ISTANBUL TIP FAKULTESI DERGISI , vol.82, no.1, pp.40-46, 2019 (ESCI) Sustainable Development identifier

Use of the Comet Assay and Molecular Docking Techniques to Evaluate the Effect of Nicotine in Human Breast Cancer Cell Line

TÜRKER ŞENER L., KECEL GÜNDÜZ S., Şener A., Çelikok Y., BIÇAK B., KÖKCÜ Y., et al.
International Journal of Scientific and Technological Research , vol.4, no.10, pp.1-15, 2018 (Scopus) Sustainable Development

Refereed Congress / Symposium Publications in Proceedings

Raman ve FT-IR spektroskopisi ile Küçük Hücreli Dışı Akciğer Kanserinde Non-İnvaziv Tanı: Yenilikçi Bir Moleküler Yaklaşım

DEMİRAĞ A. D., YILDIRIM M., ŞAHİN F., BIÇAK B., ELBEYLİ L.
ON TARGED MASTER ONCOLOGY, Muğla, Turkey, 26 - 29 September 2024

INVESTIGATION OF THE ANTIVIRAL EFFECT OF AMENTOFLAVONE BY MOLECULAR DOCKING METHOD

Yıldırım N. B., Bıçak B.
TÜRK FİZİK DERNEĞİ 40. ULUSLARARASI FİZİK KONGRESİ, Muğla, Turkey, 2 - 06 September 2024, pp.341

EVALUATION OF THE ANTITUMOR EFFECT OF ΒETA‐ CARYOPHYLLENE: IN SILICO METHODS

Bıçak B.
7. Uluslararası Ankara Multidisipliner Bilimsel Çalışmalar Kongresi, Ankara, Turkey, 5 - 06 March 2024, pp.1

INVESTIGATION OF THE ANTITUMOR EFFECT OF VIRIDIFLOROL WITH MOLECULAR DOCKING METHOD

Bıçak B.
3.Uluslararası Çankaya Bilimsel Çalışmalar Kongresi, Ankara, Turkey, 28 - 29 February 2024, pp.1

INVESTIGATION OF ANTIHYPERTENSIVE MECHANISMS OF VALYLTRYPTOPHAN DIPEPTIDE BY MOLECULAR DOCKING METHOD

Bıçak B.
AVRASYA 8th INTERNATIONAL CONFERENCE ON APPLIED SCIENCES, Tbilisi, Georgia, 14 - 16 July 2023, pp.1

GLY-HIS-LYS TRİPEPTİDİNİN ANJİYOTENSİN DÖNÜŞTÜRÜCÜ ENZİM İLE ETKİLEŞİMLERİNİN MOLEKÜLER KENETLENME YÖNTEMİ İLE İNCELENMESİ

Bıçak B., Kecel Gündüz S.
5. ULUSAL BAŞKENT DİSİPLİNLER ARASI BİLİMSEL ÇALIŞMALAR KONGRESİ, Ankara, Turkey, 21 - 22 June 2022, pp.1

Molecular Docking and ADME Analyses of Antihypertensive Dipeptide

Bıçak B., Kecel Gündüz S.
14. International Conference on Mathematics Engineering Natural and Medical Sciences-EJONS, Paris, France, 6 - 07 July 2022, pp.1

IN SILICO ANALYSIS OF HAIR GROWTH PEPTIDE

Kecel Gündüz S., Koç E., Bıçak B., Özel A., Akyüz S.
Türk Fizik Derneği 35. Uluslararası Fizik Kongresi, Muğla, Turkey, 4 - 08 September 2019, pp.162

MOLECULAR DOCKING CALCULATIONS OF PIXANTRONE WITH TOPOISOMERASE II

Saları A., Kandemir M. C., BIÇAK B., KECEL GÜNDÜZ S.
Türk Fizik Derneği 35. Uluslararası Fizik Kongresi, Muğla, Turkey, 4 - 08 September 2019, pp.166

MOLECULAR DOCKING INVESTIGATION OF PIXANTRONE WITH B-DNA DODECAMER

Saları A., Kandemir M. C., BIÇAK B., KECEL GÜNDÜZ S.
Türk Fizik Derneği 35. Uluslararası Fizik Kongresi, Muğla, Turkey, 4 - 08 September 2019, pp.331

MOLECULAR DOCKING STUDIES OF PHENYTOIN, MEPHENYTOIN, AND ETHOTOIN WITH CYTOCHROME P450 3A4

Kandemir M. C., Saları A., BIÇAK B., KECEL GÜNDÜZ S.
Türk Fizik Derneği 35. Uluslararası Fizik Kongresi, Muğla, Turkey, 4 - 08 September 2019, pp.331

DNA INTERACTION OF SOME HYDANTOIN-BASED DRUGS WITH MOLECULAR DOCKING CALCULATIONS

Kandemir M. C., Saları A., BIÇAK B., KECEL GÜNDÜZ S.
Türk Fizik Derneği 35. Uluslararası Fizik Kongresi, Muğla, Turkey, 4 - 08 September 2019, pp.158

THEORETICAL CONFORMATIONAL ANALYSIS OF L-ISOLEUCYL-L-PHENYLALANINE DIPEPTIDE

BIÇAK B., KECEL GÜNDÜZ S., ÖZEL A.
1st International Symposium on Graduate Research in Science, İstanbul, Turkey, 4 - 06 October 2018, pp.9

MOLECULAR MODELING OF FAGAAGSAKSAAGTASHVSI PEPTIDE

KÖKCÜ Y., BIÇAK B., KECEL GÜNDÜZ S., ÖZEL A.
Turkish Physical Society 33 th International Physics Congress, Muğla, Turkey, 6 - 09 September 2017, pp.1

MOLECULAR DYNAMIC AND DOCKING STUDIES OF RGD PEPTIDE

BIÇAK B., KÖKCÜ Y., KECEL GÜNDÜZ S., ÖZEL A.
Turkish Physical Society 33 th International Physics Congress, Muğla, Turkey, 6 - 09 September 2017, pp.1

STRUCTURAL ANALYSIS OF SDKGATLTIKKEAFPAESKS PEPTIDE

BIÇAK B., KÖKCÜ Y., KECEL GÜNDÜZ S., ÖZEL A.
Turkish Physical Society 33 th International Physics Congress, Muğla, Turkey, 6 - 09 September 2017, pp.1

COMPUTATIONAL DESIGN OF IMMUNOGENIC PEPTIDE

KECEL GÜNDÜZ S., KÖKCÜ Y., BIÇAK B., ÖZEL A.
Turkish Physical Society 33 th International Physics Congress, Muğla, Turkey, 6 - 09 September 2017, pp.1

DETERMINATION OF CONFORMATIONAL AND STRUCTURAL FEATURES OF L-GLY-L-GLU DIPEPTIDE

BIÇAK B., KECEL GÜNDÜZ S., ÖZEL A.
32nd International Physics Congress, Muğla, Turkey, 6 - 09 September 2016, pp.1

VIBRATIONAL SPECTROSCOPIC INVESTIGATION OF PROLINE-TYROSINE DIPEPTIDE

BIÇAK B., KECEL GÜNDÜZ S.
10th International Student Conference Of The Balkan Physical Union, İstanbul, Turkey, 3 - 05 September 2013, pp.18

Vibrational Spectroscopic Studies Of Analgesic Peptide

BIÇAK B., KECEL GÜNDÜZ S.
Turkish Physical Society 30 th International Physics Congress, İstanbul, Turkey, 2 - 05 September 2013, pp.1

Books & Book Chapters

In Silico Methods and Targeted Receptors Used in Cancer Studies

Bıçak B., Kecel Gündüz S.
in: Interdisciplinary Cancer Research, Nima Rezaei, Editor, Springer Nature, Zürich, pp.1-22, 2024

An Overview Of The Genus Rosa With Molecular Modeling Studies

Bıçak B., Kecel Gündüz S.
in: Rosa, mine koçyiğit,yağmur emre arıcan,yusuf kenan haspolat, Editor, Orient Publications, Ankara, pp.48-56, 2023

An Overview Of The Economic Potential Of Medicinal Plants

Bıçak B., Kecel Gündüz S.
in: Medicinal and Aromatic Plants, Mine Koçyiğit,Yusuf Kenan Haspolat, Editor, Orient Publications, Ankara, pp.9-18, 2023

Importance Of Medicinal And Aromatic Plants In Drug Discovery And Development

Kecel Gündüz S., Bıçak B.
in: Medicinal and Aromatic Plants, Mine koçyiğit,Yusuf Kenan Haspolat, Editor, Orient Publications, Ankara, pp.1-8, 2023

Nanoparticles and Plant-Microbe Interactions: Current Status and Overview

Bıçak B., Kecel Gündüz S., Çekiç F. Ö., Gören Sağlam N.
in: Nanoparticles and plant-microbe interactions: An environmental perspective, Seena .Sahadeva, Editor, Elsevier Science, Oxford/Amsterdam , Amsterdam, pp.1-36, 2022

Computer-Aided Drug Design of Plant-Based Compounds

Bıçak B., Kecel Gündüz S.
in: Isolation, Characterization, and Therapeutic Applications of Natural Bioactive Compounds, Ajeet Singh, Editor, IGI Global, Pennsylvania, pp.320-345, 2022

A Contribution of Spectrophotometric Methods to Medicinal Plant Taxonomy

Koçyiğit Avcı M., Geçimli F., Bıçak B., Vatandaşlar Ö., Kecel Gündüz S.
in: Isolation, Characterization, and Therapeutic Applications of Natural Bioactive Compounds, Ajeet Singh, Editor, IGI Global, Pennsylvania, pp.297-319, 2022

Molecular Modeling of Nanoparticles

Bıçak B., Gök B., Kecel Gündüz S., Kılınç Y.
in: Computer Aided Pharmaceutics and Drug Delivery, Vikas Anand Saharan, Editor, Springer, London/Berlin , New Delhi, pp.35-50, 2021

Targeted Drug Delivery in Cancer Treatment

Bıçak B., Kecel Gündüz S., Özel A.
in: Advancements in Cancer Therapeutics , Dr. Sumit Kumar,Dr. Saurabh Verma,Prof. Moshahid Alam Rizvi, Editor, IGI Global, Pennsylvania, pp.382-412, 2021 Sustainable Development

Computational Drug Design Methods Used in Cancer Studies

Kecel Gündüz S., Bıçak B., Özel A.
in: Advancements in Cancer Therapeutics, Dr. Sumit Kumar,Dr. Saurabh Verma,Prof. Moshahid Alam Rizvi, Editor, IGI Global, Pennsylvania, pp.89-115, 2021 Sustainable Development

Drug delivery nanosystems for neural regenerative medicine

Kecel Gündüz S., Bıçak B., Özel A.
in: NEURAL REGENERATIVE NANOMEDICINE, Mehdi Razavi, Editor, Academic Press , Oxford, pp.89-116, 2020

Metrics

Publication

61

Citation (WoS)

101

H-Index (WoS)

7

Citation (Scopus)

115

H-Index (Scopus)

7

Citation (Scholar)

131

H-Index (Scholar)

7

Citiation (TrDizin)

1

H-Index (TrDizin)

1

Project

8

Intellectual Property

1

Open Access

48
UN Sustainable Development Goals