Publications & Works

Publication Network
Journal articles indexed in SCI, SSCI, and AHCI 20

Syntheses of new ternary complexes with 1-benzoyl-3-(benzimidazoyl)thiourea) and amino acids: Experimental, theoretical, electrochemical, antioxidant, antibacterial, and molecular docking studies

Tüfekyapan T., Yıldırım Baştemur G., Bıçak B., Akpinar R., Şanlı N. Ö., Kecel Gündüz S., et al.
Inorganic Chemistry Communications , vol.173, 2025 (SCI-Expanded) identifier

Structural analyses (Spectroscopic and <i>in silico</i>), DNA-binding and <i>in vitro</i> studies of two popular Sage Species (<i>Salvia officinalis</i> and <i>Salvia fruticosa</i>)

BIÇAK B., Gok B., Kecel-Gunduz S., KILINÇ Y., KOÇYİĞİT AVCI M., Inan H. A., et al.
JOURNAL OF ESSENTIAL OIL BEARING PLANTS , vol.28, no.1, pp.207-223, 2025 (SCI-Expanded) identifier identifier

Investigation of Hydantoin-Based Drugs Used in the Treatment of Epilepsy Using Quantum Chemical Calculations, Molecular Docking, Molecular Dynamics, ADMET, In Vitro, and Spectroscopic Methods

Kandemir M. C., BIÇAK B., KECEL GÜNDÜZ S., AKMAN G.
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY , vol.124, no.19, 2024 (SCI-Expanded) Sustainable Development identifier identifier

Phytochemical profiling, in vitro biological activities, and in silico (molecular docking and absorption, distribution, metabolism, excretion, toxicity) studies of <i>Polygonum cognatum</i> Meissn

Akpinar R., YILDIRIM BAŞTEMUR G., BIÇAK B., ŞANLI N. Ö., MERTOĞLU KAMALI E., PEKMEZ M., et al.
JOURNAL OF SEPARATION SCIENCE , vol.47, 2024 (SCI-Expanded) identifier identifier identifier

In silico and in vitro studies of Tyr-Lys-Thr tripeptide against human lung cancer cell line (A549)

BIÇAK B., AKMAN G.
BRATISLAVA MEDICAL JOURNAL-BRATISLAVSKE LEKARSKE LISTY , vol.125, no.10, pp.597-604, 2024 (SCI-Expanded) Sustainable Development identifier identifier identifier

New coumarin derivative with potential antioxidant activity: Synthesis, DNA binding and<i> in</i><i> silico</i> studies (Docking, MD, ADMET)

KECEL GÜNDÜZ S., KILINÇ Y., BIÇAK B., Gok B., Belmen B., AYDOĞAN F., et al.
ARABIAN JOURNAL OF CHEMISTRY , vol.16, no.2, 2023 (SCI-Expanded) Sustainable Development identifier identifier

Structural, spectroscopic, molecular docking, ADME, molecular dynamics studies of Val-Trp dipeptide

BIÇAK B.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS , vol.41, no.23, pp.13873-13890, 2023 (SCI-Expanded) Sustainable Development identifier identifier identifier

Microplastic Accumulation in Crayfish Astacus leptodactylus (Eschscholtz 1823) and Sediments of Durusu (Terkos) Lake (Turkey)

MÜLAYİM A., Bat L., Oztekin A., KECEL GÜNDÜZ S., Yucedag E., BIÇAK B.
WATER AIR AND SOIL POLLUTION , vol.233, no.11, 2022 (SCI-Expanded) Sustainable Development identifier identifier

Molecular docking studies of YKT tripeptide and drug delivery system with poly(epsilon-caprolactone) nanoparticles

Bicak B., Kecel-Gunduz S., Budama-Kilinc Y., Ozdemir B.
ARCHIV DER PHARMAZIE , vol.355, 2022 (SCI-Expanded) identifier identifier identifier

Structural, spectroscopic, in silico, in vitro and DNA binding evaluations of tyrosyl-lysyl-threonine

BIÇAK B., KECEL GÜNDÜZ S., KILINÇ Y., Imhof P., Gok B., AKMAN G., et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS , vol.40, no.22, pp.12148-12164, 2022 (SCI-Expanded) Sustainable Development identifier identifier identifier

Peptide based nano-drug candidate for cancer treatment: Preparation, characterization,<i> in</i><i> vitro</i> and<i> in</i><i> silico</i> evaluation

BIÇAK B., KILINÇ Y., KECEL GÜNDÜZ S., Zorlud T., AKMAN G.
JOURNAL OF MOLECULAR STRUCTURE , vol.1240, 2021 (SCI-Expanded) identifier identifier

Computer-aided anticancer drug design:<i> In</i><i> vitro</i> and<i> in</i><i> silico</i> studies of new iminocoumarin derivative

KECEL GÜNDÜZ S., KILINÇ Y., Gok B., BIÇAK B., AKMAN G., Arvas B., et al.
JOURNAL OF MOLECULAR STRUCTURE , vol.1239, 2021 (SCI-Expanded) Sustainable Development identifier identifier

New nanodrug design for cancer therapy: Its synthesis, formulation, in vitro and in silico evaluations

KILINÇ Y., Kecel-Gunduz S., Ozdemir B., BIÇAK B., AKMAN G., ARVAS B., et al.
ARCHIV DER PHARMAZIE , vol.353, no.11, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

In Silico design of AVP (4–5) peptide and synthesis, characterization and in vitro activity of chitosan nanoparticles

Kecel-Gunduz S., Budama-Kilinc Y., Çakır Koç R., Zorlu T., Bicak B., Kokcu Y., et al.
DARU, Journal of Pharmaceutical Sciences , vol.28, pp.139-157, 2020 (SCI-Expanded) Sustainable Development identifier identifier identifier

Structural analysis, molecular dynamics and docking calculations of skin protective tripeptide and design, characterization, cytotoxicity studies of its PLGA nanoparticles

Kokcu Y., Kecel-Gunduz S., Budama-Kilinc Y., Cakir-Koc R., Bicak B., Zorlu T., et al.
Journal of Molecular Structure , vol.1200, 2020 (SCI-Expanded) Sustainable Development identifier identifier

In silico Analysis of Sulpiride, Synthesis, Characterization and In vitro Studies of its Nanoparticle for the Treatment of Schizophrenia

Kecel-Gunduz S., Budama-Kilinc Y., Cakir-Koc R., Zorlu T., Bıçak B., Kokcu Y., et al.
CURRENT COMPUTER-AIDED DRUG DESIGN , vol.16, no.2, pp.104-121, 2020 (SCI-Expanded) identifier identifier identifier

Papain Loaded Poly(epsilon-Caprolactone) Nanoparticles: In-silico and In-Vitro Studies

Budama-Kilinc Y., Cakir-Koc R., Kecel-Gunduz S., Zorlu T., Kokcu Y., Bicak B., et al.
JOURNAL OF FLUORESCENCE , vol.28, pp.1127-1142, 2018 (SCI-Expanded) identifier identifier identifier

Computational design of Phe-Tyr dipeptide and preparation, characterization, cytotoxicity studies of Phe-Tyr dipeptide loaded PLGA nanoparticles for the treatment of hypertension

Kecel-Gunduz S., Budama-Kilinc Y., Koc R. C., Kokcu Y., Bicak B., Aslan B., et al.
Journal of Biomolecular Structure and Dynamics , vol.36, pp.2893-2907, 2018 (SCI-Expanded) Sustainable Development identifier identifier identifier

Novel NAC-loaded poly(lactide-coglycolide acid) nanoparticles for cataract treatment: Preparation, characterization, evaluation of structure, cytotoxicity, and molecular docking studies

Budama-Kılınc Y., Cakır-Koc R., Kecel-Gunduz S., Kokcu Y., Bicak B., Mutlu H., et al.
PeerJ , vol.2018, 2018 (SCI-Expanded) identifier identifier identifier

Structural and spectroscopic investigation on antioxidant dipeptide, L-Methionyl-L-Serine: A combined experimental and DFT study

Kecel-Gunduz S., Bicak B., Celik S., Akyuz S., Ozel A.
Journal of Molecular Structure , vol.1137, pp.756-770, 2017 (SCI-Expanded) identifier identifier
Articles Published in Other Journals 12

The Determination of Molecular Electrostatic Potential and Anticancer Properties of Eugenol: A Theoretical Study

Bıçak B.
Celal Bayar Üniversitesi Fen Bilimleri Dergisi , vol.20, no.4, pp.116-122, 2024 (Peer-Reviewed Journal)

Geometry Optimization, Molecular Docking and ADMET Studies of Echimidine Molecule

Bıçak B.
CUMHURIYET SCIENCE JOURNAL , vol.45, no.3, pp.591-597, 2024 (Peer-Reviewed Journal)

A Study of The Anticancer Effect of 1,8 Cineole: Molecular Docking Analysis

Bıçak B.
Bilge International Journal of Science and Technology Research , vol.8, no.1, pp.50-55, 2024 (Peer-Reviewed Journal)

A Theoretical Study: DNA Binding and ADMET Profile of Some Hydroxycinnamic Acids

Bıçak B., Kecel Gündüz S.
Physics and Astronomy Reports , vol.1, no.2, pp.74-84, 2023 (Peer-Reviewed Journal)

INTERACTION OF GHK TRIPEPTIDE WITH RECEPTORS TARGETED IN SOME CANCER STUDIES: A THEORETICAL APPROACH WITH MOLECULAR DOCKING

Bıçak B., Kecel Gündüz S.
Hittite Journal of Science and Engineering , vol.10, no.3, pp.1, 2023 (Peer-Reviewed Journal) Sustainable Development

INVESTIGATION OF THE EFFICACY OF H-PHE-TYR-OH DIPEPTIDE IN THE TREATMENT OF HYPERTENSION USING IN SILICO METHODS

Bıçak B., Kecel Gündüz S.
CUMHURIYET SCIENCE JOURNAL , no.4, pp.1-12, 2022 (Peer-Reviewed Journal)

Conformational Analysis of Tyrosyl-Lysyl-Threonine Tripeptide Using MM, MD and QM Methods and Its Hyperpolarizability Study

Bıçak B., Kecel Gündüz S.
SAKARYA UNIVERSITY JOURNAL OF SCIENCE , vol.26, no.4, pp.745-756, 2022 (Peer-Reviewed Journal)

IN SILICO ANALYSIS FOR CHARACTERIZING THE STRUCTURE AND BINDING PROPERTIES OF ALA-HIS-LYS (AHK) TRIPEPTIDE

Kecel Gündüz S., Koç E., Bıçak B., Kökcü Y., Özel A., Akyüz S.
The Online Journal of Science and Technology , vol.10, no.3, pp.111-120, 2020 (Peer-Reviewed Journal)

The Interaction of Ile-Phe Dipeptide with Phosphatidylinositide 3-Kinase (PI3K): Molecular Dynamics and Molecular Docking Studies

Bıçak B., Kokcu Y., Kecel Gündüz S., Özel A., Akyüz S.
Natural and Engineering Sciences (NESciences) , no.1, pp.1, 2020 (Peer-Reviewed Journal)

Molecular Docking and Molecular Dynamics Studies of L-Glycyl-L-Glutamic Acid Dipeptide

Bıçak B., Kecel Gündüz S., Kokcu Y., Özel A., Akyüz S.
Bilge International Journal of Science and Technology Research , vol.3, no.1, pp.1-9, 2019 (Peer-Reviewed Journal)

COMPUTERISED DESIGNING OF DOXORUBICIN WITH BREAST CANCER CELLS

Sener L., Gunduz S., Şener A., Bicak B., Kokcu Y., Ozel A., et al.
JOURNAL OF ISTANBUL FACULTY OF MEDICINE-ISTANBUL TIP FAKULTESI DERGISI , vol.82, no.1, pp.40-46, 2019 (ESCI) Sustainable Development identifier

Use of the Comet Assay and Molecular Docking Techniques to Evaluate the Effect of Nicotine in Human Breast Cancer Cell Line

TÜRKER ŞENER L., KECEL GÜNDÜZ S., Şener A., Çelikok Y., BIÇAK B., KÖKCÜ Y., et al.
International Journal of Scientific and Technological Research , vol.4, no.10, pp.1-15, 2018 (Scopus) Sustainable Development
Papers Presented at Peer-Reviewed Scientific Conferences 23

KARAKILÇIK BUĞDAYINDAN ELDE EDİLEN BUĞDAY ÇİMİ SUYU TOZUNUN FİTOKİMYASAL ÖZELLİKLERİ VE ANTİKANSER POTANSİYELİ

Demirağ A. D., Yıldırım Baştemur G., Akman G., Akpınar R., Bıçak B., Perçin Özkorucuklu S., et al.
12. Türk Tıbbi Onkoloji Kongresi, Antalya, Turkey, 23 - 27 April 2025, pp.28, (Summary Text)

DUAL INHIBITION OF CXCR4 AND CLAUDIN-18 ISOFORM X1 IN GASTRIC ADENOCARCINOMA: AN IN SILICO STUDY

Demirağ A. D., Kaya V., Aksoy R. A., Bıçak B., Şahin F., Yıldırım M.
14TH INTERNATIONAL GASTROINTESTINAL CANCERS CONFERENCE, İstanbul, Turkey, 28 November - 01 December 2024, pp.30-31, (Summary Text)

DOPAMİN D2 RESEPTÖR ANTAGONİZMİNİN KÜÇÜK HÜCRELİ AKCİĞER KARSİNOMUNDA İMMÜNOMODÜLATÖR VE ANTİNEOPLASTİK ETKİLERİ: MOLEKÜLER KENETLENME VE İN SİLİCO ANALİZLERLE TÜMÖR MİKROÇEVRESİNİN YENİDEN PROGRAMLANMASI

Demirağ A. D., Yıldırım M., Bıçak B., Şahin F.
8. ULUSAL İMMÜNOTERAPİ ve ONKOLOJİ KONGRESİ, İskele, Cyprus (Kktc), 30 October - 03 November 2024, pp.41-42, (Summary Text)

Raman ve FT-IR spektroskopisi ile Küçük Hücreli Dışı Akciğer Kanserinde Non-İnvaziv Tanı: Yenilikçi Bir Moleküler Yaklaşım

DEMİRAĞ A. D., YILDIRIM M., ŞAHİN F., BIÇAK B., ELBEYLİ L.
ON TARGED MASTER ONCOLOGY, Muğla, Turkey, 26 - 29 September 2024, (Summary Text)

INVESTIGATION OF THE ANTIVIRAL EFFECT OF AMENTOFLAVONE BY MOLECULAR DOCKING METHOD

Yıldırım N. B., Bıçak B.
TÜRK FİZİK DERNEĞİ 40. ULUSLARARASI FİZİK KONGRESİ, Muğla, Turkey, 2 - 06 September 2024, pp.341, (Summary Text)

EVALUATION OF THE ANTITUMOR EFFECT OF ΒETA‐ CARYOPHYLLENE: IN SILICO METHODS

Bıçak B.
7. Uluslararası Ankara Multidisipliner Bilimsel Çalışmalar Kongresi, Ankara, Turkey, 5 - 06 March 2024, pp.1, (Summary Text)

INVESTIGATION OF THE ANTITUMOR EFFECT OF VIRIDIFLOROL WITH MOLECULAR DOCKING METHOD

Bıçak B.
3.Uluslararası Çankaya Bilimsel Çalışmalar Kongresi, Ankara, Turkey, 28 - 29 February 2024, pp.1, (Summary Text)

INVESTIGATION OF ANTIHYPERTENSIVE MECHANISMS OF VALYLTRYPTOPHAN DIPEPTIDE BY MOLECULAR DOCKING METHOD

Bıçak B.
AVRASYA 8th INTERNATIONAL CONFERENCE ON APPLIED SCIENCES, Tbilisi, Georgia, 14 - 16 July 2023, pp.1, (Summary Text)

GLY-HIS-LYS TRİPEPTİDİNİN ANJİYOTENSİN DÖNÜŞTÜRÜCÜ ENZİM İLE ETKİLEŞİMLERİNİN MOLEKÜLER KENETLENME YÖNTEMİ İLE İNCELENMESİ

Bıçak B., Kecel Gündüz S.
5. ULUSAL BAŞKENT DİSİPLİNLER ARASI BİLİMSEL ÇALIŞMALAR KONGRESİ, Ankara, Turkey, 21 - 22 June 2022, pp.1, (Full Text)

Molecular Docking and ADME Analyses of Antihypertensive Dipeptide

Bıçak B., Kecel Gündüz S.
14. International Conference on Mathematics Engineering Natural and Medical Sciences-EJONS, Paris, France, 6 - 07 July 2022, pp.1, (Summary Text)

IN SILICO ANALYSIS OF HAIR GROWTH PEPTIDE

Kecel Gündüz S., Koç E., Bıçak B., Özel A., Akyüz S.
Türk Fizik Derneği 35. Uluslararası Fizik Kongresi, Muğla, Turkey, 4 - 08 September 2019, pp.162, (Summary Text)

MOLECULAR DOCKING CALCULATIONS OF PIXANTRONE WITH TOPOISOMERASE II

Saları A., Kandemir M. C., BIÇAK B., KECEL GÜNDÜZ S.
Türk Fizik Derneği 35. Uluslararası Fizik Kongresi, Muğla, Turkey, 4 - 08 September 2019, pp.166, (Full Text)

MOLECULAR DOCKING STUDIES OF PHENYTOIN, MEPHENYTOIN, AND ETHOTOIN WITH CYTOCHROME P450 3A4

Kandemir M. C., Saları A., BIÇAK B., KECEL GÜNDÜZ S.
Türk Fizik Derneği 35. Uluslararası Fizik Kongresi, Muğla, Turkey, 4 - 08 September 2019, pp.331, (Full Text)

DNA INTERACTION OF SOME HYDANTOIN-BASED DRUGS WITH MOLECULAR DOCKING CALCULATIONS

Kandemir M. C., Saları A., BIÇAK B., KECEL GÜNDÜZ S.
Türk Fizik Derneği 35. Uluslararası Fizik Kongresi, Muğla, Turkey, 4 - 08 September 2019, pp.158, (Full Text)

MOLECULAR DOCKING INVESTIGATION OF PIXANTRONE WITH B-DNA DODECAMER

Saları A., Kandemir M. C., BIÇAK B., KECEL GÜNDÜZ S.
Türk Fizik Derneği 35. Uluslararası Fizik Kongresi, Muğla, Turkey, 4 - 08 September 2019, pp.331, (Full Text)

THEORETICAL CONFORMATIONAL ANALYSIS OF L-ISOLEUCYL-L-PHENYLALANINE DIPEPTIDE

BIÇAK B., KECEL GÜNDÜZ S., ÖZEL A.
1st International Symposium on Graduate Research in Science, İstanbul, Turkey, 4 - 06 October 2018, pp.9, (Full Text)

STRUCTURAL ANALYSIS OF SDKGATLTIKKEAFPAESKS PEPTIDE

BIÇAK B., KÖKCÜ Y., KECEL GÜNDÜZ S., ÖZEL A.
Turkish Physical Society 33 th International Physics Congress, Muğla, Turkey, 6 - 09 September 2017, pp.1, (Full Text)

COMPUTATIONAL DESIGN OF IMMUNOGENIC PEPTIDE

KECEL GÜNDÜZ S., KÖKCÜ Y., BIÇAK B., ÖZEL A.
Turkish Physical Society 33 th International Physics Congress, Muğla, Turkey, 6 - 09 September 2017, pp.1, (Full Text)

MOLECULAR MODELING OF FAGAAGSAKSAAGTASHVSI PEPTIDE

KÖKCÜ Y., BIÇAK B., KECEL GÜNDÜZ S., ÖZEL A.
Turkish Physical Society 33 th International Physics Congress, Muğla, Turkey, 6 - 09 September 2017, pp.1, (Full Text)

MOLECULAR DYNAMIC AND DOCKING STUDIES OF RGD PEPTIDE

BIÇAK B., KÖKCÜ Y., KECEL GÜNDÜZ S., ÖZEL A.
Turkish Physical Society 33 th International Physics Congress, Muğla, Turkey, 6 - 09 September 2017, pp.1, (Full Text)

DETERMINATION OF CONFORMATIONAL AND STRUCTURAL FEATURES OF L-GLY-L-GLU DIPEPTIDE

BIÇAK B., KECEL GÜNDÜZ S., ÖZEL A.
32nd International Physics Congress, Muğla, Turkey, 6 - 09 September 2016, pp.1, (Full Text)

VIBRATIONAL SPECTROSCOPIC INVESTIGATION OF PROLINE-TYROSINE DIPEPTIDE

BIÇAK B., KECEL GÜNDÜZ S.
10th International Student Conference Of The Balkan Physical Union, İstanbul, Turkey, 3 - 05 September 2013, pp.18, (Full Text)

Vibrational Spectroscopic Studies Of Analgesic Peptide

BIÇAK B., KECEL GÜNDÜZ S.
Turkish Physical Society 30 th International Physics Congress, İstanbul, Turkey, 2 - 05 September 2013, pp.1, (Full Text)
Books 11

In Silico Methods and Targeted Receptors Used in Cancer Studies

Bıçak B., Kecel Gündüz S.
in: Interdisciplinary Cancer Research, Nima Rezaei, Editor, Springer Nature, Zürich, pp.1-22, 2024

An Overview Of The Genus Rosa With Molecular Modeling Studies

Bıçak B., Kecel Gündüz S.
in: Rosa, mine koçyiğit,yağmur emre arıcan,yusuf kenan haspolat, Editor, Orient Publications, Ankara, pp.48-56, 2023

An Overview Of The Economic Potential Of Medicinal Plants

Bıçak B., Kecel Gündüz S.
in: Medicinal and Aromatic Plants, Mine Koçyiğit,Yusuf Kenan Haspolat, Editor, Orient Publications, Ankara, pp.9-18, 2023

Importance Of Medicinal And Aromatic Plants In Drug Discovery And Development

Kecel Gündüz S., Bıçak B.
in: Medicinal and Aromatic Plants, Mine koçyiğit,Yusuf Kenan Haspolat, Editor, Orient Publications, Ankara, pp.1-8, 2023

Nanoparticles and Plant-Microbe Interactions: Current Status and Overview

Bıçak B., Kecel Gündüz S., Çekiç F. Ö., Gören Sağlam N.
in: Nanoparticles and plant-microbe interactions: An environmental perspective, Seena .Sahadeva, Editor, Elsevier Science, Oxford/Amsterdam , Amsterdam, pp.1-36, 2022

Computer-Aided Drug Design of Plant-Based Compounds

Bıçak B., Kecel Gündüz S.
in: Isolation, Characterization, and Therapeutic Applications of Natural Bioactive Compounds, Ajeet Singh, Editor, IGI Global, Pennsylvania, pp.320-345, 2022

A Contribution of Spectrophotometric Methods to Medicinal Plant Taxonomy

Koçyiğit Avcı M., Geçimli F., Bıçak B., Vatandaşlar Ö., Kecel Gündüz S.
in: Isolation, Characterization, and Therapeutic Applications of Natural Bioactive Compounds, Ajeet Singh, Editor, IGI Global, Pennsylvania, pp.297-319, 2022

Molecular Modeling of Nanoparticles

Bıçak B., Gök B., Kecel Gündüz S., Kılınç Y.
in: Computer Aided Pharmaceutics and Drug Delivery, Vikas Anand Saharan, Editor, Springer, London/Berlin , New Delhi, pp.35-50, 2021

Targeted Drug Delivery in Cancer Treatment

Bıçak B., Kecel Gündüz S., Özel A.
in: Advancements in Cancer Therapeutics , Dr. Sumit Kumar,Dr. Saurabh Verma,Prof. Moshahid Alam Rizvi, Editor, IGI Global, Pennsylvania, pp.382-412, 2021 Sustainable Development

Computational Drug Design Methods Used in Cancer Studies

Kecel Gündüz S., Bıçak B., Özel A.
in: Advancements in Cancer Therapeutics, Dr. Sumit Kumar,Dr. Saurabh Verma,Prof. Moshahid Alam Rizvi, Editor, IGI Global, Pennsylvania, pp.89-115, 2021 Sustainable Development

Drug delivery nanosystems for neural regenerative medicine

Kecel Gündüz S., Bıçak B., Özel A.
in: NEURAL REGENERATIVE NANOMEDICINE, Mehdi Razavi, Editor, Academic Press , Oxford, pp.89-116, 2020
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