Prof. Özgür ÇAKIR

Publication Network

Published journal articles indexed by SCI, SSCI, and AHCI

Transcriptome-wide analysis reveal dynamic expression changes during endoplasmic reticulum stress in tomato

Pulat E., Çakır Ö.

PLANT BIOSYSTEMS , vol.1, pp.1-13, 2024 (SCI-Expanded)

Efects of nitrogen defciency and drought stresses on miRNA expressions in Arabidopsis thaliana

Yaşar S., Çakır Ö.

PLANT CELL, TISSUE AND ORGAN CULTURE , vol.157, pp.1-12, 2024 (SCI-Expanded)

Transcriptomic analysis of salt stress induced chlorophyll biosynthesis-related genes in photoheterotrophic Arabidopsis thaliana calli

Çelik H., Arıkan B., Kara N., Uçarlı C., Çakır Ö.

FUNCTIONAL & INTEGRATIVE GENOMICS , vol.23, no.2, 2023 (SCI-Expanded)

Analysis of microRNAs in response to cycloastragenol by small RNA sequencing in Arabidopsis thaliana

Mhiri W., Turgut Kara N., Nalbantoğlu B., Çakır Ö.

Plant Biotechnology Reports , vol.17, no.2, pp.213-228, 2023 (SCI-Expanded)

Synthesis and characterization of amino functional poly(acrylamide) coated Fe3O4 nanoparticles and investigation of their potential usage in DNA isolation

Yıldırım E., Arıkan B., Yücel O., Çakır Ö., Turgut Kara N., İyim T. B., et al.

CHEMICAL PAPERS , vol.76, pp.5747-5759, 2022 (SCI-Expanded)

Assessing the influence of cycloastragenol on telomere/telomerase system of Arabidopsis thaliana

Ceylan M., KINA Ü. Y., Cakir O., Kara N. T.

PLANT CELL TISSUE AND ORGAN CULTURE , vol.146, pp.83-95, 2021 (SCI-Expanded)

Effect of proteasome inhibitor MG132 on the expression of oxidative metabolism related genes in tomato

Karpuz B., Çakır Ö.

Ciencia E Tecnologia De Alimentos , vol.41, pp.1-8, 2021 (SCI-Expanded)

Arabidopsis thaliana GTS1 transcripts are activated by yeast extract

ARIKAN B., Semerci A., ÇAKIR Ö., Kara N. T.

BOTANICA SERBICA , vol.45, no.2, pp.195-201, 2021 (SCI-Expanded)

Expression analysis of miRNAs and their targets related to salt stress in Solanum lycopersicum H-2274

ÇAKIR Ö., ARIKAN B., Karpuz B., Turgut-Kara N.

BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT , vol.35, no.1, pp.283-290, 2021 (SCI-Expanded)

Transcriptome sequencing and screening of genes related to glucose availability in Schizosaccharomyces pombe by RNA-seq analysis

Tarhan Ç., Çakır Ö.

GENETICS AND MOLECULAR BIOLOGY , vol.44, no.3, 2021 (SCI-Expanded)

Transcriptomic analysis reveals responses to Cycloastragenol in Arabidopsis thaliana.

Mhiri W., Ceylan M., Turgut-Kara N., Nalbantoğlu B., Çakır Ö.

PloS one , vol.15, 2020 (SCI-Expanded)

Nutritional and health benefits of legumes and their distinctive genomic properties

Cakir O., Ucarli C., Tarhan C., Pekmez M., Turgut-Kara N.

FOOD SCIENCE AND TECHNOLOGY , vol.39, no.1, pp.1-12, 2019 (SCI-Expanded) Sustainable Development

IDENTIFICATION AND PRODUCTION OF PHENOLIC NICOTIFLORIN IN ASTRAGALUS CHRYSOCHLORUS CALLUS

Turgut-Kara N., Cakir Ö., Hasancebi S., Karabey F., Ari S.

FARMACIA , vol.66, no.3, pp.558-562, 2018 (SCI-Expanded)

Molecular cloning and biotic elicitation response of phenylalanine ammonia-lyase gene of Astragalus chrysochlorus.

Turgut-Kara N., Cakir O., Arikan B., Ari S.

Cellular and molecular biology (Noisy-le-Grand, France) , vol.64, no.5, pp.102-106, 2018 (SCI-Expanded)

Manipulating Selenium Metabolism in Plants: A Simple Twist of Metabolic Fate Can Alter Selenium Tolerance and Accumulation

Van Hoewyk D., Cakir O.

SELENIUM IN PLANTS: MOLECULAR, PHYSIOLOGICAL, ECOLOGICAL AND EVOLUTIONARY ASPECTS , vol.11, pp.165-176, 2017 (SCI-Expanded) Sustainable Development

GMO Analysis Methods for Food: From Today to Tomorrow

Cakir O., Meric S., Ari S.

FOOD SAFETY: INNOVATIVE ANALYTICAL TOOLS FOR SAFETY ASSESSMENT , pp.123-178, 2017 (SCI-Expanded) Sustainable Development

Transcriptional Regulation of MicroRNA-targeting Genes in Tomato Response to Drought Stress.

Candar-Cakir B., Cakir O., Arican E., Zhang B.

IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL , vol.52, 2016 (SCI-Expanded) Sustainable Development

Selenium induced selenocysteine methyltransferase gene expression and antioxidant enzyme activities in Astragalus chrysochlorus

Cakir O., Turgut-Kara N., Ari S.

ACTA BOTANICA CROATICA , vol.75, no.1, pp.11-16, 2016 (SCI-Expanded)

Small RNA and degradome sequencing reveals important microRNA function in Astragalus chrysochlorus response to selenium stimuli

Cakir O., Candar-Cakir B., Zhang B.

PLANT BIOTECHNOLOGY JOURNAL , vol.14, no.2, pp.543-556, 2016 (SCI-Expanded) Sustainable Development

De Novo Transcriptome Assembly and Comparative Analysis Elucidate Complicated Mechanism Regulating Astragalus chrysochlorus Response to Selenium Stimuli

Cakir O., Turgut-Kara N., Ari S., Zhang B.

PLOS ONE , vol.10, no.10, 2015 (SCI-Expanded)

SYNTHESIS AND CHARACTERIZATION OF COPOLYMERIC AND TERPOLYMERIC HYDROGEL-SILVER NANOCOMPOSITES BASED ON ACRYLIC ACID, ACRYLAMIDE AND ITACONIC ACID: INVESTIGATION OF THEIR ANTIBACTERIAL ACTIVITY AGAINST GRAM-NEGATIVE BACTERIA

Bal A., Cepni F. E., Cakir O., Acar I., Guclu G.

BRAZILIAN JOURNAL OF CHEMICAL ENGINEERING , vol.32, no.2, pp.509-518, 2015 (SCI-Expanded)

Detection of genetically modified organisms in soy products sold in Turkish market

Mandaci M., Cakir O., Turgut-Kara N., Meric S., Ari Ş.

FOOD SCIENCE AND TECHNOLOGY , vol.34, no.4, pp.717-722, 2014 (SCI-Expanded) Sustainable Development

Evaluation of biological activities of Physalis peruviana ethanol extracts and expression of Bcl-2 genes in HeLa cells

Cakir O., Pekmez M., Cepni E., Candar B., Fidan K.

FOOD SCIENCE AND TECHNOLOGY , vol.34, no.2, pp.422-430, 2014 (SCI-Expanded)

Detection of genetically modified maize and soybean in feed samples

Meric S., Cakir O., Turgut-Kara N., Ari S.

GENETICS AND MOLECULAR RESEARCH , vol.13, no.1, pp.1160-1168, 2014 (SCI-Expanded) Sustainable Development

Cloning and molecular characterization of selenocysteine methyltransferase (AchSMT) cDNA from Astragalus chrysochlorus

Cakir O., Ari S.

PLANT OMICS , vol.6, no.2, pp.100-106, 2013 (SCI-Expanded) Sustainable Development

Selenium Metabolism in Plants: Molecular Approaches

Cakir O., Turgut-Kara N., Ari S.

ADVANCES IN SELECTED PLANT PHYSIOLOGY ASPECTS , pp.209-232, 2012 (SCI-Expanded)

Micropropagation and root culture of Turkish endemic Astragalus chrysochlorus (Leguminosae)

Hasancebi S., Kara N. T., Cakir O., Ari Ş.

TURKISH JOURNAL OF BOTANY , vol.35, no.2, pp.203-210, 2011 (SCI-Expanded)

Selenium tolerance in Astragalus chrysochlorus: identification of a cDNA fragment encoding a putative Selenocysteine methyltransferase

Ari S., Cakir O., Turgut-Kara N.

ACTA PHYSIOLOGIAE PLANTARUM , vol.32, no.6, pp.1085-1092, 2010 (SCI-Expanded) Sustainable Development

Defensive and secondary metabolism in Astragalus chrysochlorus cell cultures, in response to yeast extract stressor

Cakir O., Ari S.

JOURNAL OF ENVIRONMENTAL BIOLOGY , vol.30, no.1, pp.51-55, 2009 (SCI-Expanded)

Cytotoxic activity of crude extracts from Astragalus chrysochlorus (Leguminosae)

Karagoz A., Turgut-Kara N., Cakir O., Demirgan R., Ari S.

BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT , vol.21, no.2, pp.220-222, 2007 (SCI-Expanded)

Articles Published in Other Journals

Molecular cloning of cDNA encoding WD40 repeat sequences from Legume Species

Arıkan B., ÇAKIR Ö., TURGUT KARA N.

Journal of Molecular Biology and Genetics , vol.1, no.1, pp.27-32, 2016 (Peer-Reviewed Journal)

Comparative phylogenetic analysis of phenylpropanoid metabolism genes of legume plants

TURGUT KARA N., ÇAKIR Ö.

PLANT OMICS , vol.8, no.1, pp.55-61, 2015 (Scopus)

Effects of Geven root extract on proliferation of HeLa cells and bcl-2 gene expressions

Özcan Arıcan G., Çakır Ö., Arıcan E., Turgut Kara N., Dağdeviren Ö., Arı Ş., et al.

AFRICAN JOURNAL OF BIOTECHNOLOGY , vol.11, no.18, pp.4296-4304, 2012 (Peer-Reviewed Journal)

Refereed Congress / Symposium Publications in Proceedings

ANALYZING OF ANTHOCYANIN ACCUMULATION AND GROWTH RATIOS OF Black carrot SSP. CALLUS UNDER THE SALICYLIC ACID AND SALINITY STRESSES

Odabaşı B., Şebikbay S., Pulat E., Çakır Ö.

III. International Agricultural, Biological & Life Science Conference, Edirne, Turkey, 29 - 31 August 2022, pp.536

EFFECT OF ER STRESS ON VARIOUS MIRNA EXPRESSIONS IN TOMATO

Pulat E., Arslantürk A. H., Çakır Ö.

III. International Agricultural, Biological & Life Science Conference, Edirne, Turkey, 29 - 31 August 2022, pp.268

Puccinellia distans - A potential plant to reveal boron toxicity and salt tolerance mechanisms

Hakki E. E., Pandey A., Khan M. K., Hamurcu M., Celik O., Gezgin S., et al.

European Biotechnology Congress, Valencia, Spain, 11 - 13 April 2019, vol.305

miRNA Expression Analysis Under Salt Stress in H2274 Solanum lycopersicum

Arıkan B., Karpuz B., Turgut Kara N., Çakır Ö.

2nd International conference on Plant and Molecular Biology (PMB 2019) , Amsterdam, Netherlands, 23 - 25 October 2019, pp.68

Determination of the effect of curcumin on superoxide dismutase and catalase activity in tomato

Yaşar S., Hatipoğlu D., Karpuz B., ÇAKIR Ö.

7th international congress of The molecular Biology association of Turkey, İstanbul, Turkey, 27 - 29 September 2019, pp.25

Effect of beta-hydroxybutyrate in aging process Schizosaccharomyces pombe

Uludağ H., TARHAN Ç., ÇAKIR Ö., Ataözü M.

7th international congress of The molecular Biology association of Turkey, İstanbul, Turkey, 27 - 29 September 2019, pp.81

Cytotoxicity and AntibacterialActivity of Silk Fibroin Based Wound Dressing Films Incorporated with Ginger Extract

Özbaş Z., Bal Öztürk A., Püren Akgüner Z., Özgen S., Özkahraman B., ÇEPNİ YÜZBAŞIOĞLU F. E., et al.

Brightlands Rolduc Polymer Conference, Kerkrade, Netherlands, 9 - 11 September 2019, pp.1

Does GTS1 has an important role under stress conditions in Arabidopsis?

Arıkan B., Semerci A., Ceylan R. M., Çakır Ö., Turgut Kara N.

International Conference on Plant, Cellular and Molecular Biology, Valencia, Spain, 18 - 20 February 2019, pp.28

miRNA expression and salt stress relation in H2274 Solanum lycopersicum

Arıkan B., Karpuz B., Isin S., Turgut Kara N., Çakır Ö.

international eurasian conference on biological and chemical sciences (eurasianbiochem 2018), Ankara, Turkey, 26 - 27 April 2018, pp.760

Bioactive properties of Turkish Endemic Astragalus chrysochlorus

ARI Ş., Hasançebi S., TURGUT KARA N., ÇAKIR Ö.

Drug Discovery and Therapy World Congress 2015, Boston, United States Of America, 22 - 25 July 2015, vol.1, no.1, pp.45

Transcriptomic analysis on Endemic Astragalus chrysoclorus Calli in Response to Selenium Treatment

ÇAKIR Ö., Turgut Kara N., ARI Ş.

Genom Varyasyonları: Uygulama ve Veri Analizleri Sempozyumu Uluslararası katılımlı., İstanbul, Turkey, 15 - 16 September 2014, pp.17

An Overview to Elucidation of the Gene Expression in Crocus sativusL. by High Throughput Analysis.

ÇAKIR Ö.

Genom Varyasyonları: Uygulama ve Veri Analizleri Sempozyumu, İstanbul, Turkey, 15 - 16 September 2014, pp.18

Antibacterial and antioxidant activities of Physalis peruviana

Pekmez M., ÇEPNİ F. E., Candar Çakır B., Çakır Ö.

5th Central European Congress of Life Sciences, Krakow, Poland, 8 - 11 October 2013, pp.38

Bcl-2 family gene expression on HeLa cells treated with Physalis peruviana ethanol extracts

ÇAKIR Ö., Candar Çakır B., Pekmez M., Fidan K.

V th Central European Congress of Life Sciences, Poland, 1 - 04 October 2013, pp.38

Hydrogel-Silver Nanocomposites for Antibacterial Applications", 8th International Conference on the Environmental Effects of Nanoparticles and Nanomaterials (Nano 2013)

BAL A., ÇEPNİ F. E., ÇAKIR Ö., ACAR I., GÜÇLÜ G.

Aix-Marseille University, (Uluslararası), Aix-En-Provence, France, 1 - 04 July 2013

Hydrogel-Silver Nanocomposites For Antibacterial Applications

BAL A., Çepni F. E., ÇAKIR Ö., ACAR I., GÜÇLÜ G.

8th International Conference On The Environmental Effects Of Nanoparticles And Nanomaterials, 2013, Marseille, France, 1 - 04 July 2013, pp.126

Cytotoxic Effects Of Physalis Peruviana Ethanol Extracts On Hela Cells

Fidan K., Candar Çakır B., PEKMEZ M., ÇAKIR Ö.

1st Mediterranean Symposium on Medicinal and Aromatic Plants (MESMAP-2013), Cyprus (Kktc), 1 - 04 April 2013, pp.240

Analysis of two phenylpropanoid genes in Astragalus chrysochlorus

Kara N. T., Cakir O., Ari S.

European Biotechnology Congress, İstanbul, Turkey, 28 September - 01 October 2011, vol.22

Astragalus chrysochlorus’da Selenyum Birikimine İlişkin Ayrım Katsayısının Hesaplanması

ÇAKIR Ö., Çakmak İ., ARI Ş.

16. Ulusal Biyoteknoloji Kongresi, Antalya, Turkey, 1 - 04 January 2010, pp.12-13

Arpa (Hordeum vulgare L.)’nın farklı çeşit ve eksplantlarında in vitro rejenerasyon kapasitesi

Yörük E., Çepni E., ÇAKIR Ö., Albayrak G., ARI Ş., Gürel F.

16. Ulusal Biyoteknoloji Kongresi, Antalya, Turkey, 1 - 04 January 2010, pp.106-107

Astragalus chrysochlorus’da Selenyum Birikimine İlişkin Ayrım Katsayısının Hesaplanması

ÇAKIR Ö., Çakmak İ., ARI Ş.

XVI. Ulusal Biyoteknoloji Kongresi, Antalya, Turkey, 1 - 04 December 2009, pp.12-13

Arpa (Hordeum vulgare L.)’nın farklı çeşit ve eksplantlarında in vitro rejenerasyon kapasitesi

Yörük E., Çepni E., ÇAKIR Ö., ALBAYRAK G., ARI Ş., GÜREL F.

XVI. Ulusal Biyoteknoloji Kongresi, Antalya, Turkey, 1 - 04 December 2009, pp.106-109

Geven (Astragalus chrysochlorus) kök ekstresinin apoptoz etkisinin moleküler düzeyde araştırılması

Özcan Arıcan G., ÇAKIR Ö., ARICAN E., Turgut Kara N., dağdeviren Ö., ARI Ş., et al.

XI: Ulusal Tıbbi Biyoloji ve Genetik Kongresi, Muğla, Turkey, 1 - 04 October 2009, pp.172

Selenocysteine Se-methyltransferase gene in Astragalus chrysochlorus

Ari S., Cakir O.

34th Congress of the Federation-of-European-Biochemical-Societies, Prague, Czech Republic, 4 - 09 July 2009, vol.276, pp.272

Detection of genetically modified soy in processed foods sold commercially in Turkey by PCR-based method

ARI Ş., ÇAKIR Ö.

1st Global conference on GMO Analysis, Italy, 1 - 04 June 2008, pp.55

Astragalus chrysochlorus’da Selenosistein Metil Transferaz Geninin Moleküler Analizi

ARI Ş., Turgut Kara N., ÇAKIR Ö., Şenol N. Ö., KARA N. T.

XV. Ulusal Biyoteknoloji Kongresi, Antalya, Turkey, 1 - 04 October 2007, pp.115-117

Astragalus chrysochlorus’a süspansiyon kültürlerinde maya özütünün hücre canlılığı üzerindeki etkisi

ÇAKIR Ö., Turgut Kara N., ARI Ş., KARA N. T.

XV. Ulusal Biyoteknoloji Kongresi, Antalya, Turkey, 1 - 04 October 2007, pp.17

Selenium accumulation in Astragalus chrysochlorus

Ari S., Senol N. O., Cakir O., Kara N. T.

13th European Congress on Biotechnology (ECB 13), Barcelona, Spain, 16 - 19 September 2007, vol.131

Endemik Astragalus chrysochlorus’da biyoteknolojik çalışmalar

Arı Ş., Turgut Kara N., Çakır Ö., Hasançebi S., Şenol N. Ö.

Biyoteknoloji Yüzyılı ve Türkiye Kongresi, İstanbul, Turkey, 3 - 04 June 2006, pp.26

Effect of yeast extract and chitosan on the phenylalanine ammonia lyase activity and production of total phenolics on Astragalus chrysochlorus cell suspension cultures

ÇAKIR Ö., ARI Ş.

IV Balkan Botanical Congress, Bulgaria, 1 - 04 June 2006, pp.284

Cytotoxic activity of crude extracts from Astragalus chrysochlorus

ARI Ş., Karagöz A., Turgut Kara N., ÇAKIR Ö., KARA N. T.

IV Balkan Botanical Congress, Bulgaria, 1 - 04 June 2006, pp.280

Maya özütünün Astragalus chrysochlorus hücre süspansiyon kültürlerinde fenil alanin amonyum liyaz aktivitesi üzerine etkisinin araştırılması

ÇAKIR Ö., ARI Ş.

XIV Ulusal Biyoteknoloji Kongresi, Eskişehir, Turkey, 1 - 04 August 2005, pp.590

Astragalus chrysochlorus hücre süspansiyon kültürlerinde sekonder metabolit üretiminde pH, amonyum nitrat, maya özütünün etkileri

ÇAKIR Ö., ARI Ş.

XVII: Ulusal Biyoloji Kongresi, Adana, Turkey, 1 - 04 June 2004, pp.17

Astragalus chrysochlorus’da saçak kök kültürlerinin kurulması

Hasançebi S., ÇAKIR Ö., Turgut Kara N., ARI Ş., KARA N. T.

XIII. Biyoteknoloji Kongresi, Çanakkale, Turkey, 1 - 04 August 2003, pp.89

Astragalus chrysochlorus’a elektroporasyon yoluyla gen aktarımı çalışmaları

Turgut Kara N., Şahin Hasançebi S., ÇAKIR Ö., ARI Ş., KARA N. T.

XIII. Biyoteknoloji Kongresi, Çanakkale, Turkey, 1 - 04 August 2003, pp.102

Kültürleme koşullarının Astragalus chrysochlorus hücre süspansiyon kültürleri üzerindeki etkileri

ÇAKIR Ö., Turgut Kara N., Şahin Hasançebi S., ARI Ş., KARA N. T.

XIII. Biyoteknoloji Kongresi, Çanakkale, Turkey, 1 - 04 August 2003, pp.88

Fiziksel Kültürleme Koşullarının Astragalus chrysochlorus saçak kök kültürleri üzerindeki etkileri

ÇAKIR Ö., Şahin Hasançebi S., ARI Ş.

XVI.Ulusal Biyoloji Kongresi, Malatya, Turkey, 1 - 04 September 2002, pp.171

Books & Book Chapters

Manipulating Selenium Metabolism in Plants: A Simple Twist of Metabolic Fate can Alter Selenium Tolerance and Accumulation

Van Hoewyk D., ÇAKIR Ö.

in: Selenium in plants: Molecular, Physiological, Ecological and Evolutionary Aspects, Elizabeth Pilon-Smits, Lenny Winkel, Zhi-Qing (ZQ) Lin, Editor, Springer, London/Berlin , Cham, pp.165-176, 2017

Expert Reports

Fikri ve Sınai Haklar- Biyoteknoloji

Çakır Ö.

Fikri ve Sınai Haklar, pp.80, İstanbul, 2021

Metrics

Publication

Citation (WoS)

292

H-Index (WoS)

Citation (Scopus)

330

H-Index (Scopus)

Citation (Scholar)

271

H-Index (Scholar)

Project

Intellectual Property

Thesis Advisory

Open Access

UN Sustainable Development Goals

Publications & Works

Published journal articles indexed by SCI, SSCI, and AHCI

Articles Published in Other Journals

Refereed Congress / Symposium Publications in Proceedings

Books & Book Chapters

Expert Reports

Metrics

Publication

Citation (WoS)

H-Index (WoS)

Citation (Scopus)

H-Index (Scopus)

Citation (Scholar)

H-Index (Scholar)

Project

Intellectual Property

Thesis Advisory

Open Access